From bioinformatics design and workflow management to workload acceleration and performance optimization, clinical laboratories and biotech enterprises demand an automated process of implicitly and dynamically scaling workflows as large-scale utilization increases. It all starts with a standardized workflow management infrastructure.
SeqsLab Jobs builds on a cloud-native infrastructure and Cromwell workflow management system originally developed by the Broad Institute, and implements the GA4GH Workflow Execution Service and Tool Registry Service standards for workflow process orchestration. It empowers the biomedical industry to innovate and deliver analysis products at scale and speed.
Design automated workflows¶
Writing your own scientific, analytics, and machine learning workflows with OpenWDL, a human-readable and –writable description language. WDL in SeqsLab simplifies the development life cycle of data processing workflows from building and validation to production.
For details, see Run your WDL on SeqsLab.
Accelerate a variety of workloads the common way¶
Connect to a variety of bioinformatics and SQL tools and run all data parallel operations from SeqsLab lakehouse architecture directly. SeqsLab combines the best of structured data processing and data lake, but with richer optimization, higher performance, lower costs, and better support for Machine Learning workloads.
For details, see Operators.
No cluster computing management is necessary¶
Spinning up and down on-demand, independent Apache Spark serverless clusters for cost-performance efficiency. SeqsLab automates the workflow task scheduling and runs Apache Spark data processing jobs in parallel; it can execute heterogenous big data pipelines, save costs and reduce turnaround time.
For details, see .
Ensure data, code and execution integrity¶
Comply with regulatory requirements and ensure run-to-run reproducibility, consistency, and validity. SeqsLab platform follows IEC 62304 medical device software life cycle processes to audit and validate the integrity, accuracy, and versioning of data, analysis tools, and execution environment for the entire life cycle of workflows.
For details, see Compliance.
To learn more about how to use SeqsLab Jobs, see Manage your jobs.