delete-version
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Delete a TRS tool version based on the tool ID and tool version ID. |
--tool-id STR
Specify a TRS ID (required).
--version-id STR
Specify a TRS version.
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execs
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Create a SeqsLab execs.json file. |
--working-dir STR
Specify the absolute working directory path hosting all WDL files (required). For example, /home/ubuntu/wdl/.
--inputs STR
Specify the folder path of inputs.json in relation to the working directory (required). For example, inputs.json.
--main-wdl STR
Specify the folder path of the main WDL file in relation to the working directory (required). For example, main.wdl.
--output STR
Specify the output filename of execs.json in relation to the working directory (optional, default = execs.json).
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file
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Register TRS file object. |
--tool-id STR
Specify the ID of a tool that you have already registered, where you plan to register the file in (required).
--version-id STR
Specify the ID of a version that you have already registered, where you plan to register the file in (required).
--descriptor-type {WDL,CWL,NFL}
Specify the descriptor type of a tool that you have already registered, where you plan to register the file in (required).
--working-dir STR
Specify the path of the working directory (required).
--file-info STR
Specify the file description used to register TRS. The default value is extracted from the workflow section of the execs.json file (optional).
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get
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Get tool files using the SeqsLab API request /trs/v2/tools/{id}/versions/ {version_id}/{type}/files/. |
--tool-id STR
Specify a TRS ID.
--version-id STR
Specify a TRS version.
--download-path STR
Specify the file path for the tool ZIP file download (required).
--descriptor-type {WDL,CWL}
Specify the TRS descriptor type (optional, default = WDL).
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images
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List Docker images in the workspace.container_registry.container_registry. |
--workspace STR
Specify the workspace based on the signed in account.
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list
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Display a list of existing tools. |
--output {json,table}
Specify the output format of the stdout file (optional, default = json).
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tool
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Register a TRS tool object. |
--name STR
Specify the name of the tool that you want to register (required).
--has-checker
Specify whether or not this tool has a checker tool associated with it (optional).
--checker-url CHECKER_URL
Specify the URL of the checker tool that you want to register (optional).
--aliases ALIASES
Specify the aliases of the tool that you want to register (optional).
--description STR
Specify the description of the tool that you want to register (optional).
--toolclass-description STR
Specify the type of tool that you want to register (optional).
--toolclass-name STR
Specify the type of tool that you want to register (optional).
--id STR
Specify a custom identifier for the tool (optional). The identifier must only contain alphanumeric characters, hyphen, and underline.
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version
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Register the TRS object version. |
--workspace STR
Specify the workspace based on the signed in account (required).
--tool-id STR
Specify the ID of a tool that you have already registered where you plan to register the file in (required).
--id STR
Specify the version of the tool that you want to register (required). For example, 0.1, 0.1.2, 1.0, 1.1, etc.
--descriptor-type {WDL,CWL,NFL}
Specify the descriptor type of the tool that you want to register in this version (required).
--images STR
Specify a JSON string describing a list of images you want
to register in this version (required).
--name STR
Specify the name of the version that you want to register (optional).
--is-production
Specify whether or not this version of the tool that you want to register is for production use (optional, default = false).
--signed
Specify whether or not this version of the tool that you want to register is signed (optional, default = false).
--included-apps INCLUDED_APPS
Specify the apps that you want to include with the tool that you want to register in this version (optional).
--verified-source VERIFIED_SOURCE
Specify the verified source of the tool that you want to register in this version (optional).
--verified
Specify whether or not this version of the tool that you want to register is verified (optional, default = false).
--author AUTHOR
Specify the name of the author of the tool that you want to register in this version (optional).
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