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What is SeqsLab?

Run your first job

Tutorials

Deployment
- Test drive SeqsLab
- Deploy SeqsLab on Azure
CLI
- Pull and run the SeqsLab CLI
Data Hub
- Upload and register files using the SeqsLab CLI
SeqsLab Container Registry
Tools
- Register a TRS tool to the SeqsLab platform
Jobs
- Automated jobs
- Interactive jobs
Run Sheet
- Create a SeqsLab Run Sheet for sequencing experiments
- Use the SeqsLab Run Sheet with the CLI

Tasks

Manage your jobs
Manage your labels

Case studies

GATK4 Germline SNPs Indels
GATK4 Joint Genotyping
Hi-C Data Processing

Explanations

SeqsLab Platform
SeqsLab Data Hub
SeqsLab Jobs
- Workflow engine
- Workflow description
  - WDL best practice guidelines
  - WDL workflow inputs
SeqsLab Genomics and Health Data Service
Operator pipelines
- Operators
- Operator types
API

References

CLI commands
Operator pipelines
API references

.md

Role subcommands

Role subcommands#

Table 6 Role subcommands#
Subcommand	Description	Argument
`list`	Display a list of existing roles on SeqsLab.	none

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Work Execution Service (WES) subcommands

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Tool Registry Service (TRS) subcommands

By ATGENOMIX, Inc.

© Copyright 2023.

All Atgenomix products and services are for research or investigational use only, and should not be used for diagnostic purposes.